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Mononuclear gallium (III) complexes based on salicylaldoximes: Theoretical study of structures, topological and NBO analysis of hydrogen bonding interactions involving O–H···O bonds
⁎Corresponding author. Tel.: +98 5118797022; fax: +98 5118796416. farhadi_gh61@yahoo.com (Abolghasem Farhadipour)
-
Received: ,
Accepted: ,
This article was originally published by Elsevier and was migrated to Scientific Scholar after the change of Publisher.
Peer review under responsibility of King Saud University.
Abstract
The intramolecular O–H···O resonance-assisted hydrogen bonds in crystal structures of mononuclear gallium (III) complexes with salicylaldoximes are investigated. The molecular structures of these compounds were taken from X-ray crystal structures and further used to perform theoretical calculations at B3LYP/6-311G(d, p) level. The geometrical parameters of O–H···O intramolecular H-bonds were analyzed. The natural bond orbital theory (NBO) and the atoms in molecules theory (AIM) were also applied to get a more precise insight into the nature of such H-bond interactions. The bond critical points and the ring critical points were determined and their characteristics were also analyzed.
Keywords
Intramolecular hydrogen bond
The Bader theory
NBO
Vibrational frequency
Salicylaldoxime
1 Introduction
Over the last decade the coordination chemistry of salicylaldoxime (saoH2) and its derivatives (R-saoH2) has attracted a tremendous interest due to the ability of the dianions of those ligands to produce high nuclearity metal complexes especially with trivalent metal ions (Gass et al., 2008; Milios et al., 2007a,b,c; Prescimone et al., 2008; Xu et al., 2007; Stoumpos et al., 2009). It has been discovered that salicyladoximes may be utilized to produce families of hexanuclear and trinuclear MnIII single-molecules magnets (SMMs) of general formulae [MnIII6O2(R-sao)6(O2CR)2(L)4–6] and [MnIII3O(R-sao)3(O2CR)(L)3] (R = H, Me, Et, etc.; L = solvent) (Milios et al., 2007a,b,c).
Based on coordination chemistry of salicylaldoximes with trivalent metal ions and numerous experimental researches, we decided to investigate the theoretical studies on two novel salisylaldoxime complexes with general formula [Ga(acac)(saoH)2] and [Ga(acac)(MesaoH)2] (acac = acetylacetone, saoH = salicylaldoxime and Me–saoH = methylsalicylaldoxime) (see Fig. 1). The aim of the present paper is to predict the structure, vibrational spectra (harmonic wavenumbers, and relative intensities for IR spectra) and study intramolecular hydrogen bonding of [Ga(acac)(saoH)2] (Ga–saoH) and [Ga(acac)(Me–saoH)2] (Ga–Me–saoH) by means of density functional theory (DFT) levels and Hartree–Fock (HF). Comparing of (Ga–saoH) and (Ga–Me–saoH) geometrical parameters gives a clear understanding of substitution effects of hydrogen atom with methyl group (on N atom) on structure and hydrogen bond strength of the system. The calculated vibrational frequencies are compared with the obtained experimental results (Birnara et al., 2009). The atoms in molecules theory of Bader (AIM), (Bader, 1990) is also applied here to study the properties of the bond critical point of H···O contact and of the ring critical point and to analyses dependencies between topological, energetic and geometrical parameters. Intramolecular hydrogen bonding is partly responsible for the secondary, tertiary, and quaternary structures of proteins and nucleic acids. It also plays an important role in the structure of complexes such as salicylaldoxime chelate compounds. The possibility of the estimation of the H-bond energy of the intramolecular H-bridge is also analyzed.Ball and stick representation of the molecular structure of [Ga(acac)(saoH)2] (a) and [Ga(acac)(MesaoH)2] (b).
2 Computational details
The calculations were carried out at density functional theory (DFT) and HF, using GAUSSIAN 03 program (Frisch et al., 2004). The B3LYP/6-311G(d, p) and HF/6-311G(d, p) levels of theory were used to optimize the geometry of molecules. Additionally the AIM theory of Bader (1990) was used to localize bond critical points and to calculate their properties: electron densities at bond critical points (ρBCPs) and electron densities at ring critical points (ρRCPs). The Laplacians of these densities were also calculated: Laplacians of electronic densities at bond critical points ∇2ρBCPs and Laplacians of electronic densities at ring critical points ∇2ρBCPs. All AIM calculations (Bader et al., 1984; Biegler-König et al., 1982) were performed using AIM2000 program (Friedrich, 2000). The NBO analysis was carried out using version 3.1 of NBO package (Glendening et al., xxxx) included in Gaussian-03 program at B3LYP/6-311G(d, p) level of theory.
Harmonic vibrational frequency calculations at B3LYP/6-311G(d, p)//B3LYP/6-311G(p) level confirmed the structures as minima and enabled the evaluation of zero-point vibrational energies (ZPVE).
3 Results and discussion
3.1 Scanned and optimized geometries
In this work, to attain optimized structure, we varied the two O–H distances in (Ga–saoH) from 0.6 to 1.2 Å between the two maxima and calculated the energies at the B3LYP/6-311G(d, p) level by fixing all other parameters at their optimized equilibrium values obtained at B3LYP/6-311G(d, p). Calculated potential energy curve for two O–H bonds at B3LYP/6-311G(d, p) level (Ga–saoH) compound shows in Fig. 2. Then the structure with lower energy, was fully optimized, without symmetry restrictions, at the B3LYP/6-311G(d, p) level of theory using the Gaussian-03 program package (Frisch et al., 2004).Calculated potential energy curve for two O–H bond at B3LYP/6-311G(d, p) level (Ga–saoH) compounds.
The optimized geometry parameters of (Ga–saoH) and (Ga–Me–saoH) are summarized in Table 1 and its geometries are shown in Fig. 3. For comparison, the X-ray diffraction results (Birnara et al., 2009) are also given in Table 1. As it is obvious from these data the calculated geometrical parameters are not very sensitive to the choice of functional or basis set at theoretical methods. The agreement between the geometrical parameters calculated on the basis of theoretical study and the experimental data is satisfactory except for H···O1 and O–H bond lengths, which are different.
Bond length
(Ga–Me–saoH)
(Ga–saoH)
B3lyp/6-311G(d,p)
HF/6-31G(d,p)
B3lyp/6-311G(d,p)
HF/6-31G(d,p)
Ga1–O1
1.944a/1.920b
1.901/1.920
1.960/1.934
1.910/1.934
Ga1–O3
1.944/1.901
1.901/1.901
1.960/1.927
1.910/1.927
Ga1–O5
1.982/1.935
1.941/1.935
1.981/1.931
1.939/1.931
Ga1–O6
1.982/1.932
1.941/1.932
1.981/1.932
1.939/1.932
Ga1–N1
2.120/2.112
2.058/2.112
2.106/2.067
2.056/2.067
Ga1–N2
2.120/2.062
2.058/2.062
2.106/2.069
2.056/2.069
O–H
0.986/0.819
0.955/0.819
0.983/0.820
0.953/0.820
H···O1
1.724/1.943
1.801/1.943
1.781/2.000
1.877/2.000
Angle
O–H···O1
147.1/136.5
142.7/136.5
144.6/133.4
139.7/133.4
O1–Ga1–O3
163.3/164.3
168.5/164.3
164.5/166.3
169.3/166.3
O1–Ga1–O5
96.6/94.4
95.3/94.4
94.3/95.3
92.1/95.3
O1–Ga1–O6
95.2/92.8
92.9/92.8
96.6/91.8
95.7/91.8
O1–Ga1–N1
84.5/83.2
85.9/83.2
85.7/85.7
86.7/85.7
O1–Ga1–N2
84.3/85.3
86.4/85.3
84.1/84.2
86.3/84.2
O3–Ga1–O5
95.2/94.2
92.9/94.2
96.6/94.0
95.7/94.0
O3–Ga1–O6
96.6/99.5
95.3/99.5
94.3/97.9
92.1/97.9
O3–Ga1–N1
84.3/84.1
86.4/84.1
84.1/84.8
86.3/84.8
O3–Ga1–N2
84.6/86.4
85.9/86.4
85.7/86.3
86.7/86.3
O5–Ga1–O6
89.8/92.6
88.3/92.6
89.7/92.6
88.2/92.6
O5–Ga1–N1
87.1/90.1
88.3/90.1
175.7/178.2
174.9/178.2
O5–Ga1–N2
176.9/178.6
176.2/178.6
86.0/86.3
87.0/86.3
O6–Ga1–N1
176.9/175.4
176.2/175.4
86.0/89.0
87.0/89.0
O6–Ga1–N2
87.1/86.1
88.3/86.1
175.7/175.7
174.9/175.7
N1–Ga1–N2
96.0/91.3
95.3/91.3
98./92.3
97.8/92.3
Optimized geometries of (Ga–saoH) (a) and (Ga–Me–saoH) (b) at B3LYP/6-311G(d, p) level of the theory.
By comparing two structure, the H···O1 bond length of the (Ga–saoH) complex is longer than the (Ga–Me–saoH) complex (ca. 0.076 Å). Also the bond length of O–H is predicted to be shorter than mean 0.003 Å. Also the O–H···O1 bond angle of (Ga–saoH) is smaller than the (Ga–Me–saoH) compounds (ca. 3 Å), (i.e., in the HF level). These geometry parameters show that intramolecular hydrogen bond of the (Ga–Me–saoH) complex is stronger than the (Ga–saoH) complex.
3.2 Calculated frequencies
The infrared band frequencies for (Ga–saoH) and (Ga–Me–saoH) in the solid phase with the calculated frequencies and their assignments are given in Tables 2 and 3, respectively. The assignments reported in Table 2 are based on the calculated intensity of the bands and on the reported polarization of Raman bands. For the high frequencies, the assignments are straightforward. For the low frequency motions, however, the assignments are less clear cut. The fundamental vibrational frequencies for (Ga–saoH) obtained at B3LYP/6-311G(d, p) and HF/6-31G(d, p) levels were compared with the experimental values, using the root mean square (RMS) error analysis. The best results are obtained with B3LYP/6-311G(d, p), resulting in RMS = 85.0.
Theoretical
Expb
Assignments
Freq.
IR-I
3443
1591.6
νa OH
3427
71.5
3064 mbr(ν OH)
νs OH
3217
10.5
3004 w
ν CHα
3204
0.0
νs CH BZ ring (symmetry coupling)
3204
56.1
νs CH BZ ring (asymmetry coupling)
3197
31.4
νa CH BZ rings
3197
17.0
νa CH BZ rings
3175
24.4
νa CH BZ rings
3175
4.6
νa CH BZ rings
3167
5.6
νa CH BZ rings
3167
14.3
νa CH BZ rings
3138
6.2
νs CHά
3138
11.2
νa CHά
3136
0.5
νa CH3 (in the plan)
3136
40.5
νa CH3 (in the plan)
3101
13.7
νa CH3 (out of plan)
3101
0.5
νa CH3 (out of plan)
3044
2.7
νs CH3
3044
10.8
νs CH3
1717
2.1
νs C⚌N + δ OH + δ CHά + Δ saoH rings
1715
118.0
1595 s(νa C⚌N)
νa C⚌N + δ OH + δ CHά + Δ saoH rings
1654
13.2
Δ saoH rings + Δ BZ rings + νs C⚌O + δ CH BZ rings + δ CHά + δ OH
1648
253.6
1552 s
Δ saoH rings + Δ BZ rings + δ CH BZ rings
1629
466.6
1530 s(νs C⚌O)
νs C⚌O
1594
79.9
1647 m
Δ BZ rings + Δ saoH rings + δ CH BZ rings + δ CHά + δ OH
1591
77.9
Δ BZ rings + Δ saoH rings + δ CH BZ rings + δ CHά + δ OH
1575
66.4
Δ BZ rings + Δ saoH rings + δ CH BZ rings + δ CHά + δ OH
1572
3.9
Δ saoH rings + νs C–CHά–N + ν C–CHα–C + δ CHά + δ CHα + + δ OH
1571
501.7
1586 ssh(νs C⚌C)
Δ acac ring + νa C–CHά–N + ν C–CHα–C + ν C–CH3 + δ CHά + δ CHα + δ OH
1511
201.0
1517 s
Δ acac ring + νa C–O + νa C⚌O + δa CH3 + δ CHά + δ CHα + δ OH
1509
29.4
νs C–CHά + νs C–O + Δ BZ rings + δ CH BZ rings
1507
88.3
νa C⚌O + δs CH3 + Δ BZ rings + δ CH BZ rings + δ OH
1496
96.5
1465 s
νs C⚌O + δs CH3
1489
16.2
δa CH3
1488
0.2
δa CH3
1483
211.6
1440 s
νa N–CHά + νa C–O + Δ BZ rings + δ CH BZ rings + δ CHά + δ OH
1471
12.7
νa N–CHά + νa C–O + Δ BZ rings + δ CH BZ rings + δ CHά + δ OH
1438
313.7
1375 s
νa C–CHα–C + νa C⚌O + δa CH3
1411
3.5
δs CH3 + νa C–CH3
1409
51.2
δs CH3 + νa C–CH3
1376
44.2
Δ saoH rings + δ CH BZ rings + δ CHά + δ OH
1374
44.7
1350 m
Δ saoH rings + δ CH BZ rings + δ CHά + δ OH
1357
1.3
Δ saoH rings + Δ saoh rings + δ CH BZ rings + δ CHά + δ OH
1354
107.2
1328 m
Δ saoH rings + Δ saoh rings + δ CH BZ rings + δ CHά + δ OH
1323
453.2
1278 s
Δ saoH rings + Δ saoh rings + νs C–O + δ CH BZ rings + δ CHά
1315
3.4
Δ saoH rings + Δ acac ring + Δ BZ rings + νs C–O + δ CH BZ rings + δ CHά
1302
79.6
1195 m
Δ acac ring + νs C–CH3 + νs C–CHα–C
1279
0.9
Δ saoH rings + Δ BZ rings + δ CH BZ rings + δ CHά
1276
2.8
Δ saoH rings + Δ BZ rings + δ CH BZ rings + δ CHά
1231
61.6
1150 m
Δ saoH rings + Δ BZ rings + δ CH BZ rings + δ CHά + νa C–CHά + δ CHα
1230
18.8
Δ saoH rings + Δ BZ rings + δ CH BZ rings + δ CHά + νa C–CHά
1229
16.0
Δ acac rings + δ CHα + νa C–CH3
1181
16.1
δ CH BZ rings
1181
5.9
δ CH BZ rings
1147
22.2
1120 w
Δ BZ rings + δ CH BZ rings
1147
6.3
Δ BZ rings + δ CH BZ rings
1070
0.0
Γ acac ring + π CH3
1069
177.2
νa N–OH + Δ BZ rings + Δ saoH rings + δ CH BZ rings
1063
4.0
νs N–OH + Δ BZ rings + Δ saoH rings + δ CH BZ rings
1056
20.5
Γ acac ring + π CH3
1054
35.6
Δ acac ring + ρ CH3
1053
134.5
1013 s
νa N–OH + Δ BZ rings + Δ saoH rings + δ CH BZ rings
1050
2.5
νs N–OH + Δ BZ rings + Δ saoH rings + δ CH BZ rings
1048
8.8
ρ CH3
972
10.8
963 w
Γ saoH rings + γ CHά
972
4.3
Γ saoH rings + γ CHά
969
0.4
Γ BZ rings + γ CH BZ rings
969
1.7
Γ BZ rings + γ CH BZ rings
967
7.5
953 w
δ C–CH3 + Γ acac ring
951
23.9
νa C–CH3 + Γ acac ring
928
34.6
931 m
Γ BZ rings + γ CH BZ rings
928
2.7
Γ BZ rings + γ CH BZ rings
926
83.7
907 m
Δ BZ rings + Δ saoH rings
925
0.1
Δ BZ rings + Δ saoH rings
868
1.1
Γ BZ rings + γ CH BZ rings
867
13.7
859 w
Γ BZ rings + γ CH BZ rings
824
59.9
806 m
νa O–Ga–O + Δ BZ rings + Δ saoH rings + δ N–OH
824
24.9
νa O–Ga–O + Δ BZ rings + Δ saoH rings + δ N–OH
788
12.5
786 w
γ CHα
764
96.4
γ CH BZ rings
763
7.2
γ CH BZ rings
750
20.4
740 w
γ CH BZ rings
749
33.7
γ CH BZ rings
701
82.8
γ OH
692
108.6
757 s
γ OH
677
11.9
Δ acac ring + δ C–CH3
676
13.2
687 w
Γ acac ring + γ C–CH3
662
7.5
Δ BZ rings + Δ saoH rings
661
44.6
642 m
Δ BZ rings + Δ saoH rings
613
0.3
νs O–Ga–O + Δ BZ rings + Δ saoH rings
611
64.5
599 m
νa O–Ga–O + Δ BZ rings + Δ saoH rings
578
44.1
586 w
Γ BZ rings + Δ saoH rings + Δ acac ring + δ C–CH3
573
5.6
570 w
Γ BZ rings + Γ saoH rings + Δ acac ring + δ C–CH3
572
0.9
Γ BZ rings + Γ saoH rings + Γ acac ring + γ C–CH3
570
2.1
Γ BZ rings + Γ saoH rings + Γ acac ring
557
1.0
Γ BZ rings + Γ saoH rings
556
0.1
Γ BZ rings + Γ saoH rings
494
13.2
491 w
Γ BZ rings + Γ saoH rings + π CH BZ rings
490
6.4
Γ BZ rings + Γ saoH rings + π CH BZ rings
462
38.9
453 m
Δ saoH rings + δ N–OH + π CH BZ rings
451
1.8
Δ saoH rings + δ N–OH + π CH BZ rings
447
28.0
Δ acac ring + δ C–CH3
425
20.8
Δ acac ring + δ C–CH3
410
24.7
Δ BZ rings + Δ saoH rings
396
12.5
Δ BZ rings + Δ saoH rings
347
7.3
Γ BZ rings + Γ saoH rings
347
4.6
Γ BZ rings + Γ saoH rings
343
9.5
γ CHά + Γ saoh rings
327
34.5
Δ saoH rings + δ N–OH
314
18.7
γ CHά + Γ saoH rings
296
60.3
Δ acac ring + Γ saoH rings
294
6.0
νa O–Ga–O + Γ saoH rings
283
5.8
νs N–Ga–N + δ N–OH
263
23.7
νa O–Ga–O + δ C–CH3
261
13.8
Δ acac ring + δ C–CH3
255
14.1
νs O–Ga–O + δ C–CH3
238
6.7
Δ saoH rings
189
0.0
Γ saoH rings + Γ acac ring
184
2.4
Δ saoH rings
183
9.5
Γ saoH rings + Γ acac ring
177
1.3
Γ saoH rings
171
0.5
Γ acac ring + Δ saoH rings
160
0.1
Γ acac ring + γ C–CH3
157
2.1
Γ saoH rings
147
2.4
Γ saoH rings + Γ acac ring
106
0.0
τ CH3
100
0.3
Γ saoH rings
96
0.3
Γ saoH rings
91
0.9
τ CH3
61
0.2
Torsion of saoh rings
54
0.2
Torsion of saoh rings
46
1.5
Rocking of saoh rings
43
0.0
Torsion of acac ring
21
0.3
Rocking of saoh rings
21
0.9
Rocking of acac ring
RMS
85
Theoretical
Expb
Assignments
Freq.
IR-I
3300
2494.6
νa OH
3275
193.1
3050 wbr (ν OH)
νs OH
3225
8.7
ν CHα
3218
3.8
νs CH BZ ring (symmetry coupling)
3218
58.6
νs CH BZ ring (asymmetry coupling)
3209
23.6
νa CH BZ ring
3209
8.5
νa CH BZ ring
3199
4.9
νa CH BZ ring
3199
17.1
νa CH BZ ring
3182
2.6
νa CH BZ ring + νa CH3
3182
30.1
νa CH BZ ring + νa CH3
3181
0.8
νa CH BZ ring + νa CH3
3180
3.5
νa CH BZ ring + νa CH3
3154
0.2
νa CH3
3153
32.8
νa CH3
3133
4.9
νa CH3 saoh rings
3133
5.1
νa CH3 saoh rings
3120
10.0
νa CH3
3120
0.0
νa CH3
3064
3.4
νs CH3 saoh rings
3064
7.7
νs CH3 saoh rings
3055
2.0
νs CH3 acac ring (symmetry coupling)
3055
9.6
2960 w
νs CH3 acac ring (asymmetry coupling)
1713
67.9
νa CH3C⚌N + δ OH (asymmetry coupling)
1712
2.1
νa CH3C⚌N + δ OH (symmetry coupling)
1665
175.5
νs C⚌O + νs C⚌N + Δ BZ rings
1658
203.8
νs C⚌N + Δ BZ rings
1652
314.3
1593 ssh(νs C⚌N)
νs C⚌O + νa C⚌N + Δ BZ rings
1607
70.5
δ N–O–H + Δ BZ rings
1603
59.7
δ N–O–H + Δ BZ rings
1583
454.1
1579 s(ν C⚌C)
ν C–CHα–C + δ CHα
1571
119.4
δ OH (asymmetry coupling)
1561
72.4
1555 w
δ OH (asymmetry coupling)
1524
37.2
δ CH3 saoH rings + δ CH BZ rings (symmetry coupling)
1521
299.7
δ CH3 saoH rings + δ CH BZ rings (asymmetry coupling)
1514
46.0
1528 s(ν C⚌O)
νa C⚌O + δ CH3 acac ring + δ CH3 saoH rings
1499
92.2
δ CH3 saoH rings + δ CH BZ rings (asymmetry coupling)
1497
5.2
δ CH3 saoH rings + δ CH BZ rings (symmetry coupling)
1493
66.2
δ CH3 acac ring
1489
273.4
Δ BZ rings + δ CH BZ rings
1487
5.7
δ CH3 saoH rings + δ CH BZ rings
1485
12.4
δ CH3 acac ring
1484
0.2
δ CH3 acac ring
1481
9.6
δ CH3 saoH rings + δ OH
1469
0.4
δ CH3 saoH rings + δ OH + Δ BZ rings + δ CH BZ rings
1458
216.4
νa C⚌O + δ CH3 acac ring
1417
8.7
δ CH3 saoH rings
1417
15.0
1439 m
δ CH3 saoH rings
1410
3.7
δ CH3 acac ring
1407
15.9
1400 m
δ CH3 acac ring
1374
16.5
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings + δ OH
1370
56.0
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings + δ OH
1357
360.7
1337 s
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings + δ OH
1343
7.7
1322 w
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings + δ OH
1315
34.5
1303 m
Δ acac ring + νs C–CH3 acac ring + νs C–CHα–C
1295
78.7
1275 m
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings
1293
159.4
1242 m
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings + δ OH
1285
10.4
Δ BZ ring + Δ saoH rings + ν C–CH3 saoH rings
1284
1.3
Δ BZ ring + Δ saoH rings + νν C–CH3 saoH rings
1230
10.6
1192 w
Δ acac ring + δ CHα + ν C–CH3 acac ring
1192
2.2
δ CH BZ rings
1192
3.3
δ CH BZ rings
1162
23.8
1160 w
Δ BZ rings + δ CH BZ rings
1161
5.2
Δ BZ rings + δ CH BZ rings
1105
190.6
νa N–OH + Δ BZ rings + Δ saoh rings + δ CH BZ rings + π CH3 saoH rings
1100
1.1
νs N–OH + Δ BZ rings + Δ saoh rings + δ CH BZ rings + π CH3 saoH rings
1091
38.7
1137 w
νa N–OH + Δ BZ rings + Δ saoh rings + δ CH BZ rings + π CH3 saoH rings
1089
2.0
νs N–OH + Δ BZ rings + Δ saoh rings + δ CH BZ rings + π CH3 saoH rings
1068
0.0
Γ acac ring + π CH3 acac ring
1065
11.7
1130 w
Γ acac ring + π CH3 acac ring + ρ CH3 saoH rings
1063
0.1
Γ saoH rings + ρ CH3 saoH rings
1063
7.1
Γ saoH rings + ρ CH3 saoH rings + π CH3 acac ring
1060
46.6
1076 w
νa N–OH + Δ BZ rings + δ CH BZ rings + π CH3 saoH rings
1060
2.1
νs N–OH + Δ BZ rings + δ CH BZ rings + π CH3 saoH rings
1056
34.0
1044 w
Δ acac ring + ρ CH3 acac ring
1041
3.9
Δ acac ring + ρ CH3 acac ring
999
131.8
1019 m
Δ BZ rings + Δ saoH rings + νa C–CH3 saoH rings
998
1.3
Δ BZ rings + Δ saoH rings + νs C–CH3 saoH rings
983
0.1
γ CH BZ rings
983
0.2
γ CH BZ rings
971
5.1
961 w
Δ acac ring + ρ CH3 acac ring
956
23.5
953 w
Δ acac ring + νa C–CH3 acac ring
947
4.8
γ CH BZ rings
947
0.0
γ CH BZ rings
887
86.9
928 m
Δ BZ rings + Δ saoH rings
879
0.0
Δ BZ rings + Δ saoH rings + γ CH BZ rings
878
1.8
Δ BZ rings + Δ saoH rings + γ CH BZ rings
875
8.3
Δ BZ rings + Δ saoH rings + γ CH BZ rings
821
9.4
γ CHα
812
62.2
δ OH + Δ saoh rings + Δ BZ rings + π CH3 saoH rings
803
59.7
862 m
δ OH + Δ saoh rings + Δ BZ rings + π CH3 saoH rings
788
35.8
δ OH + γ CH BZ rings
787
31.5
δ OH + γ CH BZ rings
773
8.4
δ OH + γ CH BZ rings
772
52.1
770 m
δ OH + γ CH BZ rings
767
85.3
763 m
δ OH + γ CH BZ rings
758
0.8
δ OH + γ CH BZ rings
708
7.1
Γ acac ring + ρ CH3 acac ring
684
17.7
682 w
Δ acac ring
667
5.5
Δ saoH rings + Δ BZ rings
665
30.6
644 w
Δ saoH rings + Δ BZ rings
646
22.1
Δ saoH rings + Δ BZ rings
633
0.5
Δ saoH rings + Δ BZ rings + ρ CH3 saoH rings
629
0.9
Δ saoH rings + Δ BZ rings + ρ CH3 saoH rings
626
2.6
617 w
Δ saoH rings + Δ BZ rings + ρ CH3 saoH rings
590
26.8
580 w
Δ acac ring
584
0.0
Γ acac ring
579
25.5
565 w
Γ BZ rings
576
0.0
Γ BZ rings + Δ saoH rings
551
2.2
Γ BZ rings + Δ saoH rings
548
0.7
Γ BZ rings + Δ saoH rings
494
3.0
Γ BZ rings + Δ saoH rings
492
0.0
Γ BZ rings + Δ saoH rings
467
36.5
480 w
Δ acac ring
448
72.7
Γ BZ rings + Δ saoH rings
432
26.7
Δ saoH rings + δ C–CH3 saoH rings + δ N–OH
429
1.3
Γ BZ rings + Δ saoH rings
428
3.4
Δ saoH rings + Δ acac ring + δ C–CH3 saoH rings
418
9.6
Δ saoH rings + δ C–CH3 saoH rings + δ N–OH
406
3.8
Δ saoH rings
395
3.5
Δ saoH rings
365
1.4
Γ BZ rings + Γ saoH rings
358
0.5
Γ BZ rings + Γ saoH rings
338
32.5
Γ BZ rings + Γ saoH rings
329
6.8
Γ BZ rings + Γ saoH rings + δ C–CH3 acac ring
321
53.2
Γ BZ rings + Γ saoH rings + Γ acac ring
303
0.3
Γ BZ rings + Γ saoH rings + Γ acac ring
294
21.9
Δ saoH rings
283
23.6
Δ acac ring + Δ saoH rings
257
5.3
Γ saoH rings
256
0.3
Δ acac ring + δ C–CH3
213
5.2
Γ acac ring + Δ BZ rings
211
2.0
Δ acac ring + Δ saoH rings
209
9.5
Γ acac ring + Δ BZ rings
207
0.5
Γ acac ring + Δ saoH rings
184
2.1
Γ saoH rings
175
0.0
Γ acac ring + Δ saoH rings
170
1.9
τ CH3 acac ring + rocking of acac ring
167
0.9
τ CH3 acac ring + rocking of acac ring
137
0.1
torsion of saoH rings
128
0.1
torsion of saoH rings
109
0.2
τ CH3 saoH rings + torsion of saoH rings
107
0.5
τ CH3 saoH rings + torsion of saoH rings
94
0.0
τ CH3 acac ring
82
1.3
τ CH3 acac ring
73
0.1
τ CH3 saoH rings
72
0.0
τ CH3 saoH rings
54
1.5
Torsion of saoH rings
49
0.6
Torsion of saoH rings
48
0.0
Torsion of acac ring
44
0.3
Rocking of saoH rings
26
0.2
Rocking of saoH rings
25
0.8
Rocking of acac ring
RMS
51
The calculated frequencies are slightly higher than the observed values for the majority of the normal modes. Two factors may be responsible for the discrepancies between the experimental and computed spectra of (Ga–saoH) and (Ga–Me–saoH). The first is caused by the environment. The second factor for these discrepancies is the fact that the experimental value is an anharmonic frequency while the calculated value is a harmonic frequency.
Table 2 and 3 lists calculated vibrational frequencies for (Ga–saoH) and (Ga–Me–saoH) together with assignments and approximate descriptions of the motions. The calculated frequencies are compared to the experimental values reported by Giannis S. Papaefstathiou and coworkers (Birnara et al., 2009).
These tables include an approximate description base on the normal modes in terms of the stretching (ν) and bending (δ) of the bonds at the B3LYP method with 6-311G(d, p) basis set. The assignments reported are based on the calculated intensity of the bands and the RMS error. Assignment is calculated with respect to the reported data by Giannis S. Papaefstathiou and coworkers (Birnara et al., 2009). By analyzing the IR bands, the highest frequency at 3443 cm−1 is assigned to the asymmetric stretching of O–H bonds with calculated intensities of ca. 1591.6 km mol−1, never before reported. The two vibrational frequencies at 3427 and 3217 cm−1, are assigned to the symmetric stretching of O–H and C–Hα bonds with calculated intensities of ca. 71.5 and 10.5 km mol−1, respectively. Giannis S. Papaefstathiou and coworkers have assigned these modes to the stretching of O–H and C–Hα at 3064 and 3004 cm−1 with medium broad and weak intensities (Birnara et al., 2009). The IR band at 1595 cm−1 with stronger intensity which has been assigned to the asymmetry stretching of C⚌N bonds by Giannis S. Papaefstathiou et al., calculated at ca. 1715 cm−1 with 118 km mol−1 intensity. This mode is assigned to asymmetric stretching of C⚌N and bending motions of OH and CHα bonds and in plane deformation of saoH rings exactly. The frequency of 1629 cm−1 with 466.6 km mol−1 intensity observed at 1530 cm−1 with strong intensity, assigned to symmetric stretching of C⚌O. The observed vibration of 1586 cm−1 that has been assigned to symmetric stretching of C⚌C bonds by Giannis S. Papaefstathiou et al. calculated at 1571 cm−1, is assigned to in plane deformation of acac rings (Δ acac ring) with asymmetry stretching of C–CHά–N, stretching of C–CHα–C, and C–CH3 and bending motion of CHά, CHα and OH. The largest difference between calculated frequencies and experimental data is about 363 cm−1. This mode involves symmetric stretching of O–H bonds, with the bending motion having a larger effect on the dipole moment. Since in real systems O–H bonds engage in interactions (e.g., hydrogen bonding) that are ignored in the “gas-phase model” calculations, the vibrational frequencies seem to have increased. The other source of error may be due to the fact that the absorption band is relatively broad. However, the intensity of the peak implies that it is correctly assigned. The remaining experimental vibrations of 1517, 1465, 1440 and 1375 cm−1, observed at 1511, 1496, 1483 and 1438 cm−1 with strong intensity, respectively, their intensities match reported data well.
3.3 Hydrogen bond
3.3.1 AIM analysis
The ‘‘atoms in molecules’’ theory of Bader (AIM) (Bader, 1990) is a very useful method for the estimation of hydrogen bond energy (Carrol et al., 1988a; Carrol et al., 1988b; Koch and Popelier, 1995; Mo et al., 1992 and Mo et al., 1994; Raissi et al., 2007). The Bader theory is based on topological properties of the electron density (ρBCP), and Laplacian of the electron density (∇2ρBCP) at the bond critical points (BCP) of two hydrogen bonded atoms. Therefore, the analysis of bond critical points was applied to obtain the hydrogen bond energy.
Theoretical studies are able to obtain a full description of both topological and energetic properties at critical points. It is possible to calculate such energetic parameters as the local kinetic energy density, G(r), and the local electron potential energy density, V(r). Experimental studies of electron density do not provide the description of energetic properties of critical points. However, Abramov has proposed the evaluation of G(r) in terms of electron density ρ(r), its gradient ∇2ρ(r) and its Laplacian ∇2ρ(r) functions (Abramov, 1997). At the critical point, where ∇2ρ(rCP) = 0 the Abramov relation takes the form: All values in this relation are expressed in atomic units. The local potential energy density V(rCP) can be obtained from the virial equation (Abramov, 1997): It was found (Espinosa et al., 1998) that V(ρBCP) correlates with the H-bond energy – EHB (EHB = 1/2 V(ρBCP). V(ρBCP) designates the local electron potential energy density at the H···Y BCP; Y designates the proton acceptor in X–H···Y hydrogen bond. Hence the topological theory of Bader (Carrol et al., 1988a,b) is also useful for the estimation of H-bond energy from the electron density obtained experimentally like, for example, X-ray diffraction measurement applied to the crystal structure determination (Espinosa et al., 1999).
The topological parameters (ρBCP, ∇2ρBCP) in all the BCP of (Ga–Me–saoH) and (Ga–saoH) are evaluated by means of the AIM approach at the B3LYP/6-311G(d, p) level and the results collected in Table 4. Also Fig. 4 presents the molecular graphs of the two compounds analyzed here: (Ga–saoH) and (Ga–Me–saoH). One can observe big circles corresponding to attractors which are attributed to the positions of nuclei as well as small circles which correspond to the positions of bond critical points (BCPs) and ring critical points (RCPs). It can be also observed that the density and the Laplacian of charge density at the O–H bond critical point increases from (Ga–Me–saoH) to (Ga–saoH). This increment is consistent with the contraction of the intermolecular O–O distance. Therefore, we can conclude that the hydrogen bond in (Ga–Me–saoH) is stronger than the (Ga–saoH). This conclusion is strongly supported by hydrogen bond energies (see Table 5).
(Ga–saoH)
ρ
∇2ρ
(Ga–Me–saoH)
ρ
∇2ρ
O–H
0.339
0.570
O–H
0.373
0.593
H⋯O
0.040
−0.034
H⋯O
0.037
−0.028
Ga–O1
0.085
−0.093
Ga–O1
0.094
−0.131
O1–C
0.309
0.103
O1–C
0.323
0.063
Ga–N1
0.071
−0.053
Ga–N1
0.075
−0.073
SaoH ring1
0.019
−0.023
SaoH ring1
0.020
−0.024
SaoH ring2
0.014
−0.019
SaoH ring2
0.015
−0.022
Ga–O4acac
0.081
−0.086
Ga–O4acac
0.084
−0.113
acac ring
0.015
−0.020
acac ring
0.016
−0.024
BZ ring
0.020
−0.038
BZ ring
0.020
−0.041
Molecular graphs of (Ga–saoH) and (Ga–Me–saoH) at B3LYP/6-311G(d, p) level of the theory.
NBO
(Ga–saoH)
(Ga–Me–saoH)
HB1
HB2
HB1
HB2
O.N (n1O)
1.94105
1.904106
1.94234
1.94233
E (n1O)
−0.43481
−0.43481
−0.41952
−0.41952
O.N (n2O)
1.81319
1.81321
1.82137
1.82136
E (n2O)
−0.54685
−0.54683
−0.52799
−0.52801
O.N (σ∗O–H)
0.0359
0.0359
0.04286
0.04287
E (σ∗O–H)
0.40741
0.40738
0.41526
0.41525
3.3.2 NBO analysis
In the NBO analysis, the electronic wave functions are interpreted in terms of a set of occupied Lewis and a set of non-Lewis localized orbital’s (Reed et al., 1988). Delocalization effects can be identified from the presence of off diagonal elements of the Fock matrix in the NBO basis. The strengths of these delocalization interactions, E(2), are estimated by second order perturbation theory. In Table 6, the NBO occupation numbers for the σ∗(O–H) antibonds, the Oxygen lone pairs, nO, and their respective orbital energies, ε are reported. Furthermore, some of significant donor–acceptor interactions and their second order perturbation stabilization energies E(2) which were calculated at the B3LYP/6-311G(d, p) level for (Ga–saoH) and (Ga–Me–saoH) are given in Table 6. As it is common, the orbital energies, ε are reported in a.u., while the second order perturbation energies E(2) are reported in kcal mol−1.
Electron transfer
(Ga–saoH)
(Ga–Me–saoH)
HB1
HB2
HB1
HB2
n1O → σ∗ O–H
2.68
2.68
2.26
2.26
n2O → σ∗ O–H
4.49
4.49
9.02
9.2
It seems that in NBO analysis of hydrogen bond systems, the charge transfer between the lone pairs of proton acceptor and antibonds of proton donor is most significant. The σ∗(O–H) antibonds occupation numbers (Ga–saoH) and (Ga–Me–saoH) fairly high (range from 0.06325 to 0.07339e). The occupation number of these antibonds increases in order of (Ga–Me–saoH) > (Ga–saoH) and their orbital energies are also increasing in the same manner. It is important to note that the O1 lone pair’s occupation numbers differ from the ideal occupation significantly. These results can be rationalized in term of the charge transfer interaction between orbitals. As a consequence, the similar trend is predicted for intramolecular hydrogen bond strength (Ga–Me–saoH) and (Ga–saoH) which is consistent with the AIM analysis and in contrast with the hydrogen bond energy values. As illustrated in Table 6, the results of NBO analysis show that in chelated structures of (Ga–saoH) and (Ga–Me–saoH) compounds, two lone pairs of Oxygen atom (O1) participate as donor and the σ∗(O–H) antibonds as acceptor in strong intramolecular charge transfer interaction with stabilization energy value as: 23.82, 27.50 and 28.66 kcal mol−1, respectively. Similarly, we can observe that the charge transfer energy increases on going from (Ga–Me–saoH) to (Ga–saoH) complex. It is important to note that the NBO analysis permits us to estimate the molecular energy with and without some donor – acceptor intramolecular interactions. Because, the n1O1 → σ∗(O–H) and n2O1 → σ∗(O–H) are two of most important interactions in O–H···O1 hydrogen bond of these complexes.
4 Conclusion
In this work was presented the importance of the B3LYP/6-311G(d, p) calculations, NBO analysis and topological properties of the AIM theory to study the nature of the hydrogen bonds in the (Ga–saoH) and (Ga–Me–saoH) complexes. The vibrational assignments reported are based on the calculated intensity of the bands and the RMS error. The best results are obtained with B3LYP/6-311G(d, p), resulting in RMS = 85.0. The calculated frequencies are slightly higher than the observed values for the majority of the normal modes. The NBO analysis reveals that in the of (Ga–saoH) and (Ga–Me–saoH), there are strong interamolecular interactions of charge transfer from O lone pairs to the σ∗(O–H) antibonds. As a consequence, the occupation number of these antibonds is fairly high. Upon complexes formation, a charge transfer from the lone pair of the oxygen of the base (H2O) to the σ∗(O–H) antibond is also produced. At the same time, a significant decrease of the interamolecular interactions is also observed.
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